SubtiBank SubtiBank
ydeM [2019-09-04 09:22:15]
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ydeM [2019-09-04 09:22:15]

similar to dehydratase
locus
BSU_05250
pI
4.91
mw
16.02 kDa
protein length
141 aa Sequence Blast
gene length
426 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    572,974 → 573,399

    The protein

    Structure

  • [PDB|3EXZ] (from Rhodospirillum rubrum, 38% identity)

    • Biological materials

    Mutant

  • MGNA-C135 (ydeM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2133 NBRP B. subtilis, Japan]
  • BKE05250 (Δ[gene|E0C883E066E2E04C0464A15A0F3037F7AE102345|ydeM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTTACACCTCTATTTT, downstream forward: _UP4_TAACTCAGAAAGCCCGCTTT
  • BKK05250 (Δ[gene|E0C883E066E2E04C0464A15A0F3037F7AE102345|ydeM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTTACACCTCTATTTT, downstream forward: _UP4_TAACTCAGAAAGCCCGCTTT